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1. CAGEcleaner CAGEcleaner Public

   A tool to remove genomic redundancy from cblaster gene cluster hits

   Python 10

2. cfoldseeker cfoldseeker Public

   Protein structure similarity meets gene clustering mining: find gene clusters from genomically colocalised proteins.

   HTML

3. csuite csuite Public

   Streamlined workflows for query-based gene cluster mining. Supports both sequence and protein structure similarity and has automatic hit dereplication.

4. fastKris fastKris Public

   Fast automated protocol generation for crystallisation screens

   Python 1

5. MiningModellingPaePhageAceT MiningModellingPaePhageAceT Public

   Code repository of my MSc of Bioinformatics thesis "An exploratory analysis of the spread and structure of acetyltransferases in Pseudomonas phages"

   Jupyter Notebook 1

6. sequentialScanner sequentialScanner Public

   A sequential gene scanner for both gene deletions and upregulations, based on flux balance analysis

   MATLAB 1 1