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Fixes to StructureDefinitions #258

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Merged
omarisgreat merged 4 commits into from
Aug 26, 2026
Merged

Fixes to StructureDefinitions #258

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0421417
Fixes to StructureDefinitions
omarisgreat Aug 25, 2026
0232677
Removal of target profiles
omarisgreat Aug 25, 2026
ac390af
Further fixes
omarisgreat Aug 25, 2026
e766c83
Remove Slicing from DiagnosticReport.category
KazeemHamzat Aug 25, 2026
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2 changes: 1 addition & 1 deletion CodeSystem/CodeSystem-Genomics-mds-questiontag.json
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Expand Up @@ -43,7 +43,7 @@
{
"code": "HCP-13",
"display": "HCP - surname",
"definition": "HCP'surname "
"definition": "HCP's surname."
},
{
"code": "HCP-3",
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2 changes: 1 addition & 1 deletion CodeSystem/CodeSystem-Genomics-test-associationReason.json
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Expand Up @@ -31,7 +31,7 @@
},
{
"code": "reinterpretation",
"display": " Re-interpretation"
"display": "Re-interpretation"
},
{
"code": "retest",
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20 changes: 9 additions & 11 deletions Observation/Observation-SLC52A2-VariantAbsent-Example.json
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Expand Up @@ -53,15 +53,13 @@
],
"text": "Variant not detected"
},
"method": [
{
"coding": [
{
"system": "http://snomed.info/sct",
"code": "117040002",
"display": "Nucleic acid sequencing"
}
]
}
]
"method": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "117040002",
"display": "Nucleic acid sequencing"
}
]
}
}
2 changes: 1 addition & 1 deletion SearchParameter/SearchParameter-Genomics-plandefinition-actor-role.json
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Expand Up @@ -3,7 +3,7 @@
"id": "SearchParameter-plandefinition-actor-role",
"url": "https://fhir.nhs.uk/SearchParameter/plandefinition-actor-role",
"version": "0.1.0",
"name": "PlanDefinition Actor Role",
"name": "PlanDefinition_Actor_Role",
"status": "draft",
"experimental": false,
"date": "2026-05-19",
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50 changes: 5 additions & 45 deletions StructureDefinition/NHSEngland-Condition-GenomicsmCODE.json
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Expand Up @@ -2,11 +2,11 @@
"resourceType": "StructureDefinition",
"id": "NHSEngland-Condition-GenomicsmCODE",
"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Condition-GenomicsmCODE",
"version": "0.3.0",
"version": "0.3.1",
"name": "NHSEngland_Condition_GenomicsmCODE",
"title": "NHSEngland Condition GenomicsmCODE",
"status": "active",
"date": "2026-04-16",
"date": "2026-08-25",
"publisher": "NHS England",
"contact": [
{
Expand Down Expand Up @@ -79,7 +79,7 @@
"path": "Condition.category",
"sliceName": "ukcoreCategory",
"binding": {
"strength": "extensible",
"strength": "required",
"valueSet": "https://fhir.hl7.org.uk/ValueSet/UKCore-ConditionCategory"
}
},
Expand All @@ -94,8 +94,8 @@
"slicing": {
"discriminator": [
{
"type": "pattern",
"path": "$this"
"type": "value",
"path": "system"
}
],
"rules": "open"
Expand Down Expand Up @@ -146,46 +146,6 @@
"path": "Condition.subject",
"definition": "SHALL be present. Reference to the associated Patient. This MAY be through a resource reference if the ID on the central service is known (or provided within the transaction bundle) or through NHS number where this is known and has been traced through PDS"
},
{
"id": "Condition.recorder",
"path": "Condition.recorder",
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-PractitionerRole-Genomics",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole",
"http://hl7.org/fhir/StructureDefinition/Patient",
"http://hl7.org/fhir/StructureDefinition/RelatedPerson"
],
"aggregation": [
"referenced",
"bundled"
]
}
]
},
{
"id": "Condition.asserter",
"path": "Condition.asserter",
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-PractitionerRole-Genomics",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole",
"http://hl7.org/fhir/StructureDefinition/Patient",
"http://hl7.org/fhir/StructureDefinition/RelatedPerson"
],
"aggregation": [
"referenced",
"bundled"
]
}
]
},
{
"id": "Condition.note",
"path": "Condition.note",
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20 changes: 2 additions & 18 deletions StructureDefinition/NHSEngland-Consent-GenomicsPCF.json
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Expand Up @@ -2,11 +2,11 @@
"resourceType": "StructureDefinition",
"id": "NHSEngland-Consent-GenomicsPCF",
"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Consent-GenomicsPCF",
"version": "0.3.0",
"version": "0.3.1",
"name": "NHSEngland_Consent_GenomicsPCF",
"title": "NHSEngland Consent GenomicsPCF",
"status": "active",
"date": "2026-04-16",
"date": "2026-08-25",
"publisher": "NHS England",
"contact": [
{
Expand Down Expand Up @@ -139,10 +139,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Patient-Genomics",
"http://hl7.org/fhir/StructureDefinition/Patient"
],
"aggregation": [
"referenced",
"bundled"
Expand All @@ -162,14 +158,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-PractitionerRole-Genomics",
"http://hl7.org/fhir/StructureDefinition/Organization",
"http://hl7.org/fhir/StructureDefinition/Patient",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/RelatedPerson",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole"
],
"aggregation": [
"referenced",
"bundled"
Expand Down Expand Up @@ -263,10 +251,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-ServiceRequest-Genomics",
"http://hl7.org/fhir/StructureDefinition/Resource"
],
"aggregation": [
"referenced",
"bundled"
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53 changes: 5 additions & 48 deletions StructureDefinition/NHSEngland-DiagnosticReport-GenomicReport.json
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Expand Up @@ -2,11 +2,11 @@
"resourceType": "StructureDefinition",
"id": "NHSEngland-DiagnosticReport-GenomicReport",
"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DiagnosticReport-GenomicReport",
"version": "0.3.0",
"version": "0.3.1",
"name": "NHSEngland_DiagnosticReport_GenomicReport",
"title": "NHSEngland DiagnosticReport GenomicReport",
"status": "active",
"date": "2026-04-16",
"date": "2026-08-25",
"publisher": "NHS England",
"contact": [
{
Expand Down Expand Up @@ -242,13 +242,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Patient-Genomics",
"http://hl7.org/fhir/StructureDefinition/Patient",
"http://hl7.org/fhir/StructureDefinition/Group",
"http://hl7.org/fhir/StructureDefinition/Device",
"http://hl7.org/fhir/StructureDefinition/Location"
],
"aggregation": [
"referenced"
]
Expand All @@ -263,23 +256,7 @@
{
"id": "DiagnosticReport.performer",
"path": "DiagnosticReport.performer",
"definition": "SHOULD reference the organization responsible for the testing, preferably by ODS code.",
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole",
"http://hl7.org/fhir/StructureDefinition/Organization",
"http://hl7.org/fhir/StructureDefinition/CareTeam"
],
"aggregation": [
"referenced",
"bundled"
]
}
]
"definition": "SHOULD reference the organization responsible for the testing, preferably by ODS code."
},
{
"id": "DiagnosticReport.performer.reference",
Expand All @@ -294,28 +271,12 @@
{
"id": "DiagnosticReport.performer.identifier.system",
"path": "DiagnosticReport.performer.identifier.system",
"fixedUri": "https://fhir.nhs.uk/Id/ods-organisation-code"
"fixedUri": "https://fhir.nhs.uk/Id/ods-organization-code"
},
{
"id": "DiagnosticReport.resultsInterpreter",
"path": "DiagnosticReport.resultsInterpreter",
"definition": "SHOULD reference the person responsible for interpreting the raw results, preferably by a recognised NHS identifier, such as SDS code.",
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-PractitionerRole-Genomics",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole",
"http://hl7.org/fhir/StructureDefinition/Organization",
"http://hl7.org/fhir/StructureDefinition/CareTeam"
],
"aggregation": [
"referenced",
"bundled"
]
}
]
"definition": "SHOULD reference the person responsible for interpreting the raw results, preferably by a recognised NHS identifier, such as SDS code."
},
{
"id": "DiagnosticReport.specimen",
Expand All @@ -325,10 +286,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Specimen-Genomics",
"http://hl7.org/fhir/StructureDefinition/Specimen"
],
"aggregation": [
"referenced"
]
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13 changes: 2 additions & 11 deletions StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile.json
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Expand Up @@ -2,11 +2,11 @@
"resourceType": "StructureDefinition",
"id": "NHSEngland-DocumentReference-GenomicDataFile",
"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile",
"version": "0.3.0",
"version": "0.3.1",
"name": "NHSEngland_DocumentReference_GenomicDataFile",
"title": "NHSEngland DocumentReference GenomicDataFile",
"status": "active",
"date": "2026-04-16",
"date": "2026-08-25",
"publisher": "NHS England",
"contact": [
{
Expand Down Expand Up @@ -40,13 +40,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Patient-Genomics",
"http://hl7.org/fhir/StructureDefinition/Patient",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/Group",
"http://hl7.org/fhir/StructureDefinition/Device"
],
"aggregation": [
"referenced"
]
Expand Down Expand Up @@ -118,9 +111,7 @@
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Specimen-Genomics",
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-DiagnosticReport-GenomicReport",
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-ServiceRequest-Genomics",
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"
],
"aggregation": [
Expand Down
8 changes: 2 additions & 6 deletions StructureDefinition/NHSEngland-FamilyMemberHistory-Genomics.json
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Expand Up @@ -2,11 +2,11 @@
"resourceType": "StructureDefinition",
"id": "NHSEngland-FamilyMemberHistory-Genomics",
"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-FamilyMemberHistory-Genomics",
"version": "0.3.0",
"version": "0.3.1",
"name": "NHSEngland_FamilyMemberHistory_Genomics",
"title": "NHSEngland FamilyMemberHistory Genomics",
"status": "active",
"date": "2026-04-16",
"date": "2026-08-25",
"publisher": "NHS England",
"contact": [
{
Expand Down Expand Up @@ -64,10 +64,6 @@
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Patient-Genomics",
"http://hl7.org/fhir/StructureDefinition/Patient"
],
"aggregation": [
"referenced",
"bundled"
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27 changes: 2 additions & 25 deletions StructureDefinition/NHSEngland-Group-Genomics.json
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Expand Up @@ -2,11 +2,11 @@
"resourceType": "StructureDefinition",
"id": "NHSEngland-Group-Genomics",
"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Group-Genomics",
"version": "0.3.0",
"version": "0.3.1",
"name": "NHSEngland_Group_Genomics",
"title": "NHSEngland Group Genomics",
"status": "active",
"date": "2026-04-16",
"date": "2026-08-25",
"publisher": "NHS England",
"contact": [
{
Expand Down Expand Up @@ -75,29 +75,6 @@
"path": "Group.member",
"definition": "SHALL be present. `entity` SHOULD be a reference to a Patient resource within the GOMS infrastructure or a unique identifier where this is not possible. `period` SHOULD record the date the member was added to the Group. `inactive` MAY be used to record entities which are no longer members of the group, though if an individual was added to a Group in error and should never have been part of the group, the entity SHALL be removed entirely.",
"min": 1
},
{
"id": "Group.member.entity",
"path": "Group.member.entity",
"type": [
{
"code": "Reference",
"targetProfile": [
"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Patient-Genomics",
"http://hl7.org/fhir/StructureDefinition/Patient",
"http://hl7.org/fhir/StructureDefinition/Practitioner",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole",
"http://hl7.org/fhir/StructureDefinition/Device",
"http://hl7.org/fhir/StructureDefinition/Medication",
"http://hl7.org/fhir/StructureDefinition/Substance",
"http://hl7.org/fhir/StructureDefinition/Group"
],
"aggregation": [
"referenced",
"bundled"
]
}
]
}
]
}
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