Estimating the correlation of exchangeable variables in assortative mating

Overview

1. Corsym as an r function
2. Simulated Data Analysis
3. General QC before any analysis
4. Phasing for RFMix analysis
5. RFMix Run
6. Preparation for ANCESTOR Analysis
7. ANCESTOR Run
8. Preparation for ADMIXTURE Analysis
9. ADMIXTURE Run
10. Process Data
11. Trio Analysis

Repository layout

analyses/              Simulated and empirical data analyses
figures/               Figures from paper: Kennedy et al., 2026
inference_data/        Exported inference runs
prepare_data/          Genotype QC, missingness, reference and test set merge, LD runs
scripts/               Corsym as a function in R