Quality of life changes

.jenkins/Jenkinsfile

@@ -23,6 +23,7 @@ pipeline {
     agent any
     tools {
         maven 'Maven 3.6.3'
+        jdk 'Java 25'
     }
     environment {
         GEMMA_CLI_WIKI_DEPLOY_TOKEN = credentials('confluence-wiki-token')
@@ -210,7 +211,7 @@ pipeline {
                 }
                 stage('SonarQube Analysis') {
                     tools {
-                        jdk 'Java 17'
+                        jdk 'Java 25'
                     }
                     when {
                         anyOf {

gemma-core/src/main/java/ubic/gemma/persistence/service/analysis/expression/diff/DifferentialExpressionAnalysisReadServiceImpl.java

@@ -267,8 +267,8 @@ public Map<ExpressionExperimentDetailsValueObject, Collection<DifferentialExpres
                 Collection<ExpressionAnalysisResultSet> results = analysis.getResultSets();
 
                 DifferentialExpressionAnalysisValueObject avo = new DifferentialExpressionAnalysisValueObject( analysis );
-
-                BioAssaySet experimentAnalyzed = analysis.getExperimentAnalyzed();
+                
+                BioAssaySet experimentAnalyzed = ( BioAssaySet ) Hibernate.unproxy( analysis.getExperimentAnalyzed() );
 
                 avo.setExperimentAnalyzedId( experimentAnalyzed.getId() ); // might be a subset.
 

pom.xml

@@ -1668,7 +1668,7 @@
 		<!-- You may override these in ~/.m2/settings.xml. On macOS install with the HDF Group
 		     binary tarball (which ships libhdf5_java.dylib and jarhdf5-X.Y.Z.jar) and set
 		     hdf5.libDir to the bundled lib/ directory. -->
-		<hdf5.version>1.12.3</hdf5.version>
+		<hdf5.version>1.12.1</hdf5.version>
 		<!-- directory containing the HDF5 JNI shared library -->
 		<hdf5.libDir>/usr/lib64/hdf5</hdf5.libDir>
 		<mysql.version>8.4.0</mysql.version>