A graphical tool to create, execute, and visualize a multicellular model using PhysiCell.
See the PhysiCell Studio Guide for full documentation.
BIWT is a standalone, pip-installable package that adds a guided wizard for importing
single-cell data (.csv, .h5ad, and Seurat .rds) into PhysiCell initial conditions,
enabled with python bin/studio.py --biwt. See doc/BIWT.md for installing it
alongside Studio's dependencies, and the
BIWT documentation for the user guide, Seurat / R
setup, and troubleshooting.
Except when noted otherwise, the entirety of this repository is licensed under a GPL v3 License (LICENSE). This is due to the use and licensing of PyQt5 (rf. https://pypi.org/project/PyQt5/).
Files matched by the following glob patterns are licensed under BSD-3-Clause:
- *.xml
- *.yml
- *.csv
- pyMCDS*.py
- .gitignore