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Add average calibration losses - #9092
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Signed-off-by: Theo Barfoot <theo.barfoot@gmail.com>
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Included review availability: This review used your included allowance. Your plan provides up to 8 included reviews per hour; 7 remain after this review. 📝 WalkthroughWalkthroughAdds Priority: ➖ Normal Estimated code review effort: 3 (Moderate) | ~25 minutes Merge Risk: ⚪ Minimal · up to The added losses are consistently exposed and documented, and no actionable current-head merge risk remains. 🚥 Pre-merge checks | ✅ 4 | ❌ 1❌ Failed checks (1 warning)
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✨ Finishing Touches🧪 Generate unit tests (beta)
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Companion 3D segmentation calibration tutorial: Project-MONAI/tutorials#2072 |
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In `@monai/losses/calibration.py`:
- Around line 112-113: Update the weight validation in the loss constructor,
including both class_weight and empty_weight checks, to reject any non-finite
values such as NaN and infinity in addition to negative values. Preserve the
existing ValueError behavior for invalid weighting parameters, and add
constructor tests covering NaN and infinity for each supported weight input.
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docs/source/losses.rstmonai/handlers/calibration.pymonai/losses/__init__.pymonai/losses/calibration.pymonai/metrics/calibration.pytests/losses/test_calibration_loss.py
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Signed-off-by: Theo Barfoot <theo.barfoot@gmail.com>
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Hi @theo-barfoot thanks for this submission of your work again, I had a few comments to make mostly about the tests. I think it looks good in general without trying to train with the losses myself, we should merge this one then look at your tutorial you've also posted.
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I don't think the failing test is related to this PR at all so don't worry about it unless it recurs. |
Signed-off-by: Theo Barfoot <theo.barfoot@gmail.com>
## Description Adds an introductory tutorial for the average calibration losses proposed in Project-MONAI/MONAI#9092. The notebook explains predictive calibration, why it matters for medical image segmentation, and how to interpret reliability diagrams. It then compares a segmentation-only baseline with one validation-selected Hard L1-ACE configuration on complete 3D volumes from Medical Segmentation Decathlon Task04 Hippocampus. The example intentionally keeps the experiment simple: two training runs with identical initialization, data order, augmentations, and optimization settings. The calibrated objective uses a `1:1:0.30` Dice:CE:Hard-L1-ACE ratio. The held-out test set is not accessed until both validation-selected checkpoints have been fixed. ## Saved tutorial result | Configuration | Dice | ACE | MCE | | --- | ---: | ---: | ---: | | Segmentation only | 0.799317 | 0.117391 | 0.295517 | | Hard L1-ACE | 0.828645 | 0.090355 | 0.208534 | This corresponds to a 23% reduction in held-out ACE and a 29% reduction in MCE, while Dice increases by 0.0293 for this split and seed. The notebook explicitly presents this as a demonstration rather than a benchmark guarantee. ## Validation - Executed all 36 cells end to end on an NVIDIA RTX 5090 - Passed the repository runner with a one-epoch execution - Passed targeted notebook schema, syntax, formatting, PEP8, metadata, and output checks - Confirmed that saved outputs contain no execution errors or private local paths ## Dependency Depends on Project-MONAI/MONAI#9092 for `HardL1ACELoss` and `SoftL1ACELoss`. <!-- This is an auto-generated comment: release notes by coderabbit.ai --> ## Summary by CodeRabbit - **Documentation** - Added a Calibration tutorial using complete 3D MRI volumes from the MSD Task04 Hippocampus dataset. - Documented calibration metrics and losses, and the comparison of a baseline with a validation-selected Dice:CE:Hard-L1-ACE configuration on separate held-out test volumes. - Added guidance for running the experiment, including a one-epoch CI smoke test, dataset requirements, recommended GPU hardware, and required MONAI APIs. <!-- end of auto-generated comment: release notes by coderabbit.ai --> --------- Signed-off-by: Theo Barfoot <theo.barfoot@gmail.com> Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Description
Adds differentiable average calibration error losses for segmentation:
HardL1ACELoss, using hard confidence binsSoftL1ACELoss, using differentiable soft bin assignmentsThe implementation follows the publication formulation, supports binary and multiclass spatial predictions, matches MONAI calibration-metric aggregation semantics, and handles empty classes consistently with the reference implementation. The losses are exported through
monai.lossesand documented in the losses reference.This is part of #8505 and builds on the calibration metrics and handler introduced in #8707.
Validation
python -m pytest -q tests/losses/test_calibration_loss.py tests/metrics/test_calibration_metric.py tests/handlers/test_handler_calibration_error.py./runtests.sh --black --isort --ruff --pyrefly --copyrightA companion 3D segmentation tutorial PR will demonstrate the losses on Medical Segmentation Decathlon Task04 Hippocampus.