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Merge pull request #8 from Psy-Fer/dev
Docs
#31:
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Update README.md
Docs
#30:
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update changelog and readme
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#29:
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Update README.md
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#28:
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update docs
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#27:
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benchmark reproducibility, some small fixes, and clap upgrade
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#26:
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a few fixes for deletions across whole region, a name fix, and more
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#25:
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-unmapped-style reporting feature with reason comments
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#24:
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add --min_partial_coverage
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#23:
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PAF zero-output notice
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#22:
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Add more tests, fix re-open-read bug, fix off by 1 coord bug
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#21:
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Auto build indexes
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#20:
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Put partial info into header
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#19:
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Add --debug and hide all the stderr spam behind it
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#18:
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remove consensus stuff and point to poa-consensus
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#17:
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update docs
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#16:
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add --dedup
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#15:
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Code reorganisation
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#14:
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fmt fix
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#13:
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add crams
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#12:
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a bunch of checks
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#11:
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fix fmt
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#10:
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Add CRAM reading and integration tests
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#9:
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hap mode for paf
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#8:
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unwrap audit
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#7:
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