Add search-xrefs command with OLS4 and MyChem.info providers#11
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Surfaces candidate cross-references from external mapping sources and diffs them against Babel's local Concord.parquet, to help maintainers find xrefs worth importing into Babel (e.g. NCATSTranslator/Babel#715, where CHEBI:31941 / PUBCHEM.COMPOUND:43805 / UMLS:C1314429 should form a single clique but don't). Providers live in src/babel_explorer/core/providers/ behind a small Protocol + registry so new sources (UniChem, SSSOM/Mapping Commons, BridgeDb) can be added by writing one class and appending to PROVIDERS. Each candidate carries query/target CURIEs, provider name, predicate, confidence, evidence URL, and an in_babel flag. --ignore-known filters out candidates Babel already knows about. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Surfaces candidate cross-references from external mapping sources and diffs them against Babel's local Concord.parquet, to help maintainers find xrefs worth importing into Babel (e.g. NCATSTranslator/Babel#715, where CHEBI:31941 / PUBCHEM.COMPOUND:43805 / UMLS:C1314429 should form a single clique but don't).
Providers live in src/babel_explorer/core/providers/ behind a small Protocol + registry so new sources (UniChem, SSSOM/Mapping Commons, BridgeDb) can be added by writing one class and appending to PROVIDERS.
Each candidate carries query/target CURIEs, provider name, predicate, confidence, evidence URL, and an in_babel flag. --ignore-known filters out candidates Babel already knows about.