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Run the Docker build checks with python -I #4

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Merged
traviswheeler merged 1 commit into from
Aug 13, 2026
Merged

Run the Docker build checks with python -I #4

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10 changes: 8 additions & 2 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -10,10 +10,16 @@ RUN pip install --no-cache-dir .
# Singularity mounts the image read-only at run time, so leaving this to first
# use would fail on HPC. Also fails the build if the data files did not make it
# into the installed package.
RUN python -c "\
#
# -I (isolated mode) keeps the working directory off sys.path. Without it both
# commands below import the COPYed source tree at /app instead of the installed
# package: the graphs get extracted into /app where nothing reads them, and the
# assertion inspects the source tree, where the files trivially exist and so can
# never fail. Do not drop the flag.
RUN python -I -c "\
from BLIMMP_Scripts.module_detection import ensure_module_graphs; \
print('module graphs:', ensure_module_graphs())" \
&& python -c "\
&& python -I -c "\
import BLIMMP_Scripts, pathlib, sys; \
root = pathlib.Path(BLIMMP_Scripts.__file__).parent; \
required = ['Data_Dependencies/kegg_bacteria_modules.json', \
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