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@UCSF-DSCOLAB

UCSF Data Science CoLab

A collaboration-based research lab that focuses on data analysis and computational methods development

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  1. pan_cancer_immune_archetypes pan_cancer_immune_archetypes Public

    Python 13 3

  2. cyclone cyclone Public

    R 3 4

  3. BMS-225A BMS-225A Public

    Materials for BMS 225A workshop on reproducible research and data exploration

    R 2 2

  4. aarao_scripts aarao_scripts Public

    Essential Scripts used by Arjun Rao

    Python 2

  5. combes_et_al_COVID_2020 combes_et_al_COVID_2020 Public

    A repository containing code and files required to reproduce data published in Combes et.al. (2020)

    R 2 2

  6. data_processing_pipelines data_processing_pipelines Public

    A repository to store the existing pipelines to process the various CoLabs datasets

    Nextflow 2 1

Repositories

Showing 10 of 20 repositories
  • jespersen_et_al_HBV_2026 Public

    Software and auxiliary data files associated with the Jespersen & Avanesyan et.al. (2026)

    UCSF-DSCOLAB/jespersen_et_al_HBV_2026's past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 22, 2026
  • essential_scripts Public

    Essential Scripts utilized by members and collaborators of DSCoLab

    UCSF-DSCOLAB/essential_scripts's past year of commit activity
    R 0 0 0 6 Updated Sep 11, 2026
  • vulcan_compass Public
    UCSF-DSCOLAB/vulcan_compass's past year of commit activity
    Python 0 0 0 0 Updated Sep 11, 2026
  • data_processing_pipelines Public

    A repository to store the existing pipelines to process the various CoLabs datasets

    UCSF-DSCOLAB/data_processing_pipelines's past year of commit activity
    Nextflow 2 1 38 9 Updated Sep 1, 2026
  • cyclone Public
    UCSF-DSCOLAB/cyclone's past year of commit activity
    R 3 4 1 0 Updated Aug 20, 2026
  • vulcan_containers Public
    UCSF-DSCOLAB/vulcan_containers's past year of commit activity
    Singularity 0 0 0 1 Updated May 22, 2026
  • vulcan_scviz Public
    UCSF-DSCOLAB/vulcan_scviz's past year of commit activity
    R 0 0 0 0 Updated May 20, 2026
  • ImmunoMicrobiome Public

    This repository contains the code and data related to the ImmunoMicrobiome project.

    UCSF-DSCOLAB/ImmunoMicrobiome's past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 28, 2026
  • spatial_transcriptomics_colitis_analysis_2024 Public

    This repository contains the code necessary to reproduce the analyses and figures presented in our spatial transcriptomics colitis paper.

    UCSF-DSCOLAB/spatial_transcriptomics_colitis_analysis_2024's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 19, 2026
  • sicca_pipeline Public

    pipeline for running SICCA scRNA-seq analysis

    UCSF-DSCOLAB/sicca_pipeline's past year of commit activity
    R 0 0 0 0 Updated Mar 21, 2026
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