Skip to content

Add auto-calculate for Brain Radius#3

Open
pollaro wants to merge 1 commit into
masterfrom
auto_brain_radius
Open

Add auto-calculate for Brain Radius#3
pollaro wants to merge 1 commit into
masterfrom
auto_brain_radius

Conversation

@pollaro
Copy link
Copy Markdown
Collaborator

@pollaro pollaro commented May 27, 2026

Added calculation for brain radius. Must have brain mask for corresponding run in same folder with dtseries.nii file. Named with BIDS format sub-<number>_*_run-<number>_desc-brain_mask.nii.gz

  • Added Command line option for brain radius calculation
  • Calculates total number of voxels for "brain"
  • Uses resolution to get volume
  • Assumes spherical brain (ha)
  • Outputs radius

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant