OrchAlign

Our code is built on the source code provided by Seq2Exp (https://github.com/divelab/AIRS/)

Installation

• Please refer to mamba_env.yml for the exact package versions.

Dataset

The dataset for this repo can be downloaded from https://huggingface.co/datasets/xingyusu/GeneExp. Set the dataset directory as $DATA_ROOT before running any experiments.

Training and Evaluation

To reproduce the results of OrchAlign, run the following

sh Seq2ExpAli.sh $DATA_ROOT

Model Class

The class file of Our model is "GeneExpMambaCross" in "src\models\sequence\GeneExpformer.py"