Stochastic transitions - #539

Draft

RomeshA wants to merge 46 commits into

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stochastic_transitions

Commits on Oct 11, 2021

Set up stochattic probability-based transitions to allow for measuring probability of e.g. elimination of a disease
Rowanmh
committed
baeafb3

Commits on Oct 12, 2021

add stochastic_rounding
Rowanmh
committed
4037277

Commits on Nov 5, 2021

Random seed for parset sampling, random.randn -> default_rng sampling
Rowanmh
committed
425223d
default_rng for programs/covouts also
Rowanmh
committed
e3c6285
Update project.py
Rowanmh
committed
6cbcb6f
Update project.py
Rowanmh
committed
752154a

Commits on Nov 8, 2021

Acceptance criteria evaluated during runtime or postprocessing as appropriate
Rowanmh
committed
0e3bb45

Commits on Feb 22, 2023

Merge branch 'develop' into stochastic_transitions
Rowanmh
committed
224c2a6

Commits on Mar 1, 2023

Fix ResidualJunctionCompartment not applying stochasticity correctly with a ">" residual link.
kelvinburke
committed
211a7fd

Commits on Mar 3, 2023

Whitespace
Rowanmh
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98b7274

Commits on May 10, 2023

Merge pull request #473 from atomicateam/stochastic_transitions_fix
Rowanmh
authored
b955a10

Commits on Jun 18, 2023

Merge remote-tracking branch 'origin/master' into stochastic_transitions
RomeshA
committed
3188662

Commits on Nov 1, 2023

Add rng_sampler=None to Programset.sample()
kelvinburke
committed
a545715
Merge branch 'develop' into stochastic_transitions
Rowanmh
committed
61ffc2d

Commits on Nov 2, 2023

Commits on Nov 6, 2023

Add "constant" to reserved_keywords
Rowanmh
committed
1ee101c

Commits on Nov 10, 2023

Commits on Nov 24, 2023

Commits on Apr 11, 2024

Add test_tox_markovchain.py
kelvinburke
committed
269f712

Commits on Jun 5, 2024

Commits on Jun 7, 2024

Fix tests
RomeshA
committed
9dcb653
Fix seed selection
RomeshA
committed
e39b780
Implement very simple example of test reordering for further use later
RomeshA
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8abb36a
Formatting pass
RomeshA
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2a8bc1e

Commits on Jun 26, 2024

Update to Python 3.12
RomeshA
committed
3e76bf7

Commits on Jun 28, 2024

Merge branch 'enable-transfer-calibration' into stochastic_transitions
RomeshA
committed
222ad88

Commits on Aug 19, 2024

Rename stochastic to multinomial
RomeshA
committed
c2fe4ae

Commits on Sep 2, 2024

Prefill interaction tables with Y/N more logically
Rowanmh
committed
d1c2223
More informative sc.prepr output (useful when debugging)
Rowanmh
committed
c752086

Commits on Jul 24, 2026