Read informed stitching#1599
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…t original contigs
…st, rewrite with real DNA, add FASTQ rejection test, add multi-mapping tests, fix build_read_index sync
…r with canonical keys, debug2 event, simpler implementation
… tests for mismatched pairs
…r, pipeline integration test, CLI tests with exit code, fix comment
…read_index, min_depth=1, read_length=150
…tly, remove unused import
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