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Scheduled monthly dependency update for August #455

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Scheduled monthly dependency update for August #455

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2729e48
Pin cython to latest version 3.2.9
pyup-bot Aug 1, 2026
3b9fd21
Pin numpy to latest version 2.5.1
pyup-bot Aug 1, 2026
89ba38a
Pin dask to latest version 2026.7.1
pyup-bot Aug 1, 2026
4e37868
Pin scipy to latest version 1.18.0
pyup-bot Aug 1, 2026
14ff041
Pin matplotlib to latest version 3.11.1
pyup-bot Aug 1, 2026
c9b63b2
Pin seaborn to latest version 0.13.2
pyup-bot Aug 1, 2026
9b32f7f
Pin pandas to latest version 3.0.5
pyup-bot Aug 1, 2026
b57def4
Pin protopunica to latest version 0.14.8.post2
pyup-bot Aug 1, 2026
f19d883
Pin scikit-learn to latest version 1.9.0
pyup-bot Aug 1, 2026
0f8d6b1
Pin h5py to latest version 3.16.0
pyup-bot Aug 1, 2026
6d6df2e
Pin numexpr to latest version 2.14.2
pyup-bot Aug 1, 2026
814fce7
Pin zarr to latest version 3.3.0
pyup-bot Aug 1, 2026
debf3e9
Pin hmmlearn to latest version 0.3.3
pyup-bot Aug 1, 2026
94924b1
Pin ipython to latest version 9.16.0
pyup-bot Aug 1, 2026
e97b592
Pin pyfasta to latest version 0.5.2
pyup-bot Aug 1, 2026
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6 changes: 3 additions & 3 deletions requirements_dev_base.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# required
cython
numpy
dask[array]
cython==3.2.9
numpy==2.5.1
dask[array]==2026.7.1
24 changes: 12 additions & 12 deletions requirements_dev_optional.txt
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
# optional
scipy
matplotlib
seaborn
pandas
scikit-learn
h5py
numexpr
zarr
hmmlearn
protopunica
pyfasta
ipython
scipy==1.18.0
matplotlib==3.11.1
seaborn==0.13.2
pandas==3.0.5
scikit-learn==1.9.0
h5py==3.16.0
numexpr==2.14.2
zarr==3.3.0
hmmlearn==0.3.3
protopunica==0.14.8.post2
pyfasta==0.5.2
ipython==9.16.0
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