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Bioflows fails to run on large SRR files

bug

Status: Open.

#73 In compbiocore/bioflows;

· Nando1014 opened on Jan 23, 2021

slurm 20 updates

bug

Status: Open.

#71 In compbiocore/bioflows;

· JRWallace opened on Jan 16, 2021

generic run commands?

Status: Open.

#69 In compbiocore/bioflows;

· JRWallace opened on Jan 14, 2021

data layout from SRA is not reliable

Status: Open.

#66 In compbiocore/bioflows;

· aguang opened on May 13, 2020

Provide a few examples of how the suffix option works (see comment)

documentation

Status: Open.

#65 In compbiocore/bioflows;

· JRWallace opened on May 11, 2020

Document all potential fields for run_parms

documentation

Status: Open.

#64 In compbiocore/bioflows;

· JRWallace opened on May 11, 2020

There are essentially two tables of contents.. see comment

documentation

Status: Open.

#62 In compbiocore/bioflows;

· JRWallace opened on May 11, 2020

Give a more descriptive error message for the 'bootstrap' error where a job ID isn't assigned

Status: Open.

#61 In compbiocore/bioflows;

· JRWallace opened on May 11, 2020

Are there any changes to the default arguments for any of the programs run in bioflows?

documentation

Status: Open.

#60 In compbiocore/bioflows;

· JRWallace opened on May 11, 2020

Which programs are currently supported via bioflows?

documentation

Status: Open.

#59 In compbiocore/bioflows;

· JRWallace opened on May 11, 2020

Add information about how to re-run analyses (e.g., do checkpoint files need to be deleted?)

documentation

Status: Open.

#58 In compbiocore/bioflows;

· JRWallace opened on Mar 18, 2020

setup environment for bioflows docs is out of date

Status: Open.

#57 In compbiocore/bioflows;

· aguang opened on Mar 18, 2020