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PRECAST_DESC error: The radius.upper is too smaller that cannot find median neighbors greater than 4.

Status: Open.

#28 In feiyoung/PRECAST;

· littlecabiria opened on May 14, 2025

why use aligned embeddings for downstream analyses?

Status: Open.

#27 In feiyoung/PRECAST;

· abraham-abin13 opened on Nov 6, 2024

Discrepancy in PRECAST output based on setting different random seeds.

Status: Open.

#26 In feiyoung/PRECAST;

· prashanthi-ravichandran opened on Oct 24, 2024

3D Functionality in Precast

Status: Open.

#22 In feiyoung/PRECAST;

· MoussaKassim opened on Aug 20, 2024

Is it possible to provide a mannual annotation file for HCC dataset?

Status: Open.

#21 In feiyoung/PRECAST;

· JunjieXia14 opened on Aug 5, 2024

Error in ICM.EM(XList, q, K, AdjList = AdjList, beta_grid = beta_grid, : ncols of XList's components must be the same!

Status: Open.

#19 In feiyoung/PRECAST;

· 1667857557 opened on Feb 26, 2024

Prepare for upcoming Seurat v5 release

Status: Open.

#16 In feiyoung/PRECAST;

· Gesmira opened on Oct 3, 2023

Applying PRECAST to 10x Xenium data

Status: Open.

#15 In feiyoung/PRECAST;

· joonlee3 opened on Sep 19, 2023

Regarding the questions about normalization and integration of gene expression matrices

Status: Open.

#14 In feiyoung/PRECAST;

· liuxq000 opened on Aug 11, 2023

Failed to reproduce the DLPFC analysis results

Status: Open.

#13 In feiyoung/PRECAST;

· Junjun1919 opened on Aug 10, 2023

How to setup with multiple samples per condition

Status: Open.

#11 In feiyoung/PRECAST;

· ChangqingW opened on Jul 27, 2023