scRNAseq_data_analysis

scripts for 10X Genomics scRNA-seq data analysis

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
R scripts		R scripts
0.0.getdata.sbatch		0.0.getdata.sbatch
1.0.fastqc.sbatch		1.0.fastqc.sbatch
1.1.multiQC.sbatch		1.1.multiQC.sbatch
1.2.Rcorrector.sbatch		1.2.Rcorrector.sbatch
1.3.change.header.bsub		1.3.change.header.bsub
1.4.trimmomatic.sbatch		1.4.trimmomatic.sbatch
1.5.trim.AT.sbatch		1.5.trim.AT.sbatch
1.6.repair.sbatch		1.6.repair.sbatch
1.7.makeref.sbatch		1.7.makeref.sbatch
5.makeGenomeIndex.sbatch		5.makeGenomeIndex.sbatch
6.cellranger.count.sbatch		6.cellranger.count.sbatch
README.md		README.md
adapter.fa		adapter.fa
pig_genes_v95.txt		pig_genes_v95.txt
trimming.AT.pl		trimming.AT.pl

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