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Merged
kopperp merged 2 commits into from
Sep 28, 2026
Merged

CI/CD: Add shfmt stage #178

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329adb3
CI/CD: Add shfmt stage
kopperp Sep 25, 2026
e8d8542
Copyright: Update headers
kopperp Sep 26, 2026
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8 changes: 4 additions & 4 deletions .github/scripts/convergence.sh
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Expand Up @@ -44,7 +44,7 @@ for dir in "${directories[@]}"; do
# Create a temporary parameter file
temp_file=$(mktemp)
# Replace placeholders in the template and save to the temporary file
sed -e "s/<nElem>/$res/g" -e "s/<nElem2>/$nElem2/g" "$template_file" > "$temp_file"
sed -e "s/<nElem>/$res/g" -e "s/<nElem2>/$nElem2/g" "$template_file" >"$temp_file"
# Build the mesh
pyhope "$temp_file"
# Clean up the temporary file
Expand All @@ -62,9 +62,9 @@ for dir in "${directories[@]}"; do
done
cd ..
# Merge convergence.log for artifacts
echo "===== Processing Folder: $dir =====" >> "$artifact_file"
cat "convergence.log" >> "$artifact_file"
echo "" >> "$artifact_file"
echo "===== Processing Folder: $dir =====" >>"$artifact_file"
cat "convergence.log" >>"$artifact_file"
echo "" >>"$artifact_file"
# Analyze convergence behavior using a simple python script
python3 ./convergence.py

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14 changes: 7 additions & 7 deletions .github/scripts/examples.sh
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Expand Up @@ -50,25 +50,25 @@ for paramfile in "${paramfiles[@]}"; do
max_dir_length=$paramlen
fi
done
box_width=$((max_dir_length + 10)) # Add padding for aesthetics
col_width=$((max_dir_length + 2)) # Add padding for the table
box_width=$((max_dir_length + 10)) # Add padding for aesthetics
col_width=$((max_dir_length + 2)) # Add padding for the table

# Iterate over all directories, run tests, and collect results
echo "Running PyHOPE with coverage for each parameter.ini file..."

for paramfile in "${paramfiles[@]}"; do
paramdir=$(dirname "$paramfile")
paramstr=$(basename "$paramdir" )
paramdir=$(dirname "$paramfile")
paramstr=$(basename "$paramdir")
paramini=$(basename "$paramfile")

# Print a message for the running task
echo ""
printf "┌─%s─┐\n" "$(printf '─%.0s' $(seq 1 $((box_width))))"
printf "│ Running %-$(($box_width-8))s │\n" "$paramdir"
printf "│ Running %-$(($box_width - 8))s │\n" "$paramdir"
printf "└─%s─┘\n" "$(printf '─%.0s' $(seq 1 $((box_width))))"

# Change directory to where the parameter.ini file is located, suppress output
pushd "$paramdir" > /dev/null
pushd "$paramdir" >/dev/null

# Run the script under coverage and capture the result
if coverage run --data-file="$basedir/.coverage.$paramstr" --source="$basedir" -m pyhope "$paramini"; then
Expand All @@ -80,5 +80,5 @@ for paramfile in "${paramfiles[@]}"; do
fi

# Return to the previous directory, suppress output
popd > /dev/null
popd >/dev/null
done
3 changes: 3 additions & 0 deletions .github/workflows/ci.yml
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Expand Up @@ -148,6 +148,9 @@ jobs:
- uses: j178/prek-action@v3.0.0
with:
extra-args: --all-files trailing-whitespace
- uses: j178/prek-action@v3.0.0
with:
extra-args: --all-files shfmt


# ----------------------------------------------------------------------------------------------------------------------------------------------------
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2 changes: 1 addition & 1 deletion .gmsh/build_macos.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2022-2024 Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion .gmsh/build_manylinux.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2022-2024 Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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7 changes: 7 additions & 0 deletions .pre-commit-config.yaml
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Expand Up @@ -41,6 +41,13 @@ repos:
- id: gitleaks
name: gitleaks [detect hardcoded secrets]

- repo: https://github.com/scop/pre-commit-shfmt
rev: v3.14.1-1
hooks:
# Run the shell formatter
- id: shfmt
args: ["-w", "-i=2"]

- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v6.0.0
hooks:
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2 changes: 1 addition & 1 deletion pyhope/__init__.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/__main__.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/basis/basis_basis.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/basis/basis_connect.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/basis/basis_jacobian.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/basis/basis_orient.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/basis/basis_watertight.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/check/check.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/check/check_health.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/check/check_install.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/check/check_unittest.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_git.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_numba.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_parallel.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_progress.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_template.py
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Expand Up @@ -5,7 +5,7 @@
#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_tools.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_unique.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/common/common_vars.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/config/config.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/gmsh/gmsh.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/gmsh/gmsh_install.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/gmsh/gmsh_override.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/formats/cgns.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/formats/gmsh.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/formats/meshio.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/formats/vtk.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/io.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/io_debug.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/io_gmsh.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/io_vars.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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2 changes: 1 addition & 1 deletion pyhope/io/io_xdmf.py
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#
# This file is part of PyHOPE
#
# Copyright (c) 2024 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
# Copyright (c) 2024-2026 Numerics Research Group, University of Stuttgart, Prof. Andrea Beck
#
# PyHOPE is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
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