Rewrite - #65

Merged

rhoadesScholar merged 40 commits into

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Mar 20, 2026

Commits on Mar 4, 2026

feat(tests): add comprehensive unit tests for CellMapDataset, CellMapDataSplit, EmptyImage, CellMapImage, CellMapMultiDataset, ClassBalancedSampler, and CellMapDatasetWriter
rhoadesScholar
committed
0ed343b

Commits on Mar 5, 2026

feat: support 5-column CSV format in CellMapDataSplit for challenge datasets
rhoadesScholar
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754dddb
feat: enhance CellMapDataset and CellMapImage for better handling of small crops and padding scenarios
rhoadesScholar
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b567f51
feat: improve handling of 2D array specs in CellMapDataset and EmptyImage tests
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bf9de7e
feat: implement seeding for reproducible data augmentation in CellMapDataLoader and CellMapDataset
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d0c0480

Commits on Mar 13, 2026

fix: remove unused import of Subset from DataLoader in dataloader.py & black format
rhoadesScholar
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ab59d78
Potential fix for pull request finding

rhoadesScholar
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Copilot
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675b614
Initial plan
Copilot
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057f91c
Initial plan
Copilot
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b5dd7ae
Initial plan
Copilot
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911d9a6
fix: remove scalar write support from ImageWriter and CellMapDatasetWriter

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rhoadesScholar
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a1883ec
Remove scalar write support from ImageWriter

Copilot
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rhoadesScholar
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78bef7a
Fix total_voxels to use actual data volume spatial shape

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rhoadesScholar
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ab1bf11
Merge pull request #67 from janelia-cellmap/copilot/sub-pr-65-again
rhoadesScholar
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ce2a150
Merge branch 'rewrite' into copilot/sub-pr-65-yet-again
rhoadesScholar
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88d3d08
Potential fix for pull request finding

rhoadesScholar
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Copilot
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b2db1b6
Update src/cellmap_data/dataset.py
rhoadesScholar
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357f2e0
Merge branch 'rewrite' into copilot/sub-pr-65
rhoadesScholar
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71e1832
black format
rhoadesScholar
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9fa8953
Potential fix for pull request finding

rhoadesScholar
and
Copilot
authored
3ec2dab
Potential fix for pull request finding

rhoadesScholar
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Copilot
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99e0dd7
Improve total_voxels to use cached bounding_box instead of reopening s0

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rhoadesScholar
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0d4bf5a
test: add test for scalar-in-batch TypeError and explicit guard in dataset_writer

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rhoadesScholar
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7554d4c
fix: add type check for written values in CellMapDatasetWriter
rhoadesScholar
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d26ace8

Commits on Mar 18, 2026

Commits on Mar 20, 2026

fix: adjust bounding box handling and improve target array writing logic
rhoadesScholar
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bc8792c
black format
rhoadesScholar
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c0cad73
Update tests/test_dataset.py

rhoadesScholar
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Copilot
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08fd903
Initial plan
Copilot
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295b90d
Fix review comments: unused imports, min_redundant_inds, ClassBalancedSampler

Copilot
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rhoadesScholar
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6c895fa
Update src/cellmap_data/sampler.py

rhoadesScholar
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Copilot
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ddb6246
Add tests for ClassBalancedSampler edge cases and min_redundant_inds; fix naming and docstrings

Copilot
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rhoadesScholar
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4448a56
Merge pull request #70 from janelia-cellmap/copilot/sub-pr-65
rhoadesScholar
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6fb390c