Simplify project structure and unify extension configuration

[kmshdev]

This pull request introduces significant structural and functional changes to the DeepWiki MCP Server project, focusing on simplifying the codebase, removing redundant components, and improving configuration and usability. Key changes include the removal of the build script, integration of new configuration defaults, and updates to project metadata and structure.

Removal of redundant components:

• Removed the build.sh script, which previously handled building the project and creating distribution packages. This functionality is no longer required. (build.sh, build.shL1-L90)
• Deleted the deepwiki-mcp-proxy.sh script, which acted as a JSON-RPC proxy for communication with the DeepWiki server. (scripts/deepwiki-mcp-proxy.sh, scripts/deepwiki-mcp-proxy.shL1-L192)

Updates to project structure and metadata:

• Replaced [workspace] configuration in Cargo.toml with a standalone [package] configuration, reflecting a shift away from a multi-crate workspace. (Cargo.toml, Cargo.tomlL1-R20)
• Renamed crates/extension/src/lib.rs to src/lib.rs and updated references to the project name in the code to align with the new structure. (src/lib.rs, [1] [2]

Configuration improvements:

• Simplified the default settings in configuration/default_settings.jsonc by removing unnecessary protocol and API key options. (configuration/default_settings.jsonc, configuration/default_settings.jsoncL6-R10)
• Updated installation instructions to reflect the removal of manual configuration steps and the automatic handling of OAuth2 authentication. (configuration/installation_instructions.md, configuration/installation_instructions.mdR5-R9)

Documentation cleanup:

• Removed detailed troubleshooting and advanced setup sections from the installation instructions and other documentation, streamlining the user experience. (configuration/installation_instructions.md, [1] [2]

These changes collectively simplify the project, improve maintainability, and enhance the user experience by reducing manual setup and configuration requirements.

[Copilot]

Pull Request Overview

This pull request simplifies the DeepWiki MCP Server project structure by removing the workspace configuration and consolidating it into a single crate, while eliminating redundant build scripts and proxy components. The changes streamline the project for easier maintenance and deployment.

Key Changes:

• Converted from workspace structure to standalone crate configuration
• Removed proxy script and build automation in favor of direct bridge binary usage
• Updated project naming consistency from "deepwiki-mcp-server-extension" to "deepwiki-mcp-server"

Reviewed Changes

Copilot reviewed 12 out of 14 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
Cargo.toml	Converted workspace to standalone package configuration with direct dependencies
src/lib.rs	Updated project name references for consistency
extension.toml	Removed lib path reference for simplified structure
scripts/deepwiki-mcp-proxy.sh	Deleted proxy script (192 lines removed)
build.sh	Removed build automation script
configuration/*.jsonc	Simplified default settings removing protocol/API key options
configuration/*.md	Streamlined installation instructions
crates/extension/*	Removed extension-specific crate files
crates/bridge/Cargo.toml	Updated to standalone package configuration

[Copilot]

The workspace configuration only contains one member ('crates/bridge') after the extension was moved to the root. Consider whether a workspace is still necessary or if the bridge crate should also be consolidated into the main package.

Suggested change

	[workspace]
	members = ["crates/bridge"]
	# The workspace configuration has been removed as it is no longer necessary.