CISC500

Some commands rely on functions or variables created in other files. Scripts should be executed in this order:

1. preprocessData
2. analyzeByDay
3. limmaTest
4. earlyVsLate
5. heatmaps
6. upregulatedVsDownregulated
7. plotDE
8. collapseProbes
9. WGCNA
10. getModuleGenes