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Add dedup .bam output to CUT-RUN_PE and ChIPseq_PE #2

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Add dedup .bam output to CUT-RUN_PE and ChIPseq_PE#2

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@mgildea87
mgildea87
opened on Oct 13, 2025

Currently, CUT-RUN_PE and ChIPseq_PE do not output de-duplicated .bam files. This would be useful to have on hand sometimes.

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