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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 300 66

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 64 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 65 5

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 24 5

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 35 7

Repositories

Showing 10 of 289 repositories
  • kozahub Public

    Dashboard monitoring KozaHub ingest repository health

    monarch-initiative/kozahub’s past year of commit activity
    Python 0 0 0 0 Updated Apr 23, 2026
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 11 5 256 (1 issue needs help) 6 Updated Apr 23, 2026
  • dismech Public

    Disease Mechanisms KB

    monarch-initiative/dismech’s past year of commit activity
    HTML 18 BSD-3-Clause 5 94 (1 issue needs help) 10 Updated Apr 23, 2026
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 300 CC-BY-4.0 66 405 (2 issues need help) 60 Updated Apr 23, 2026
  • bioinf-agent Public

    Bioinformatics install/pipeline agent with conda, Docker, and HPC support (experimental)

    monarch-initiative/bioinf-agent’s past year of commit activity
    Python 0 0 0 0 Updated Apr 23, 2026
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 12 4 72 7 Updated Apr 22, 2026
  • monarch-mapping-commons Public

    Building a fully exectuable workflow for boomer

    monarch-initiative/monarch-mapping-commons’s past year of commit activity
    Python 5 CC0-1.0 3 15 3 Updated Apr 22, 2026
  • zfin-genotype-to-phenotype-ingest Public
    monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 1 0 3 Updated Apr 22, 2026
  • cde-harmonization Public

    Initial private repo for P1 CDE harmonization

    monarch-initiative/cde-harmonization’s past year of commit activity
    Python 3 0 6 1 Updated Apr 21, 2026
  • rare-disease-identification Public

    Enabling early identification of Rare disease with AI

    monarch-initiative/rare-disease-identification’s past year of commit activity
    Python 0 0 5 0 Updated Apr 21, 2026
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