All pull requests

Pull requests

• Add TIFF-series downsampling CLI

  codex
  #35·msayr opened Jul 24, 2026Owner·

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  3

• Add x-y crop option to zarr TIFF export

  codex
  #34·msayr opened Jul 20, 2026Owner·

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  2

• Improve off-grid stitch failure diagnostics

  codex
  #33·msayr opened Jul 17, 2026Owner·

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• Keep XY fuse configs grouped by z overlap

  codex
  #32·msayr opened Jul 17, 2026Owner·

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  2

• Add manual XY confirmation UI and initial_offset support for fuse_stacks_xy

  codex
  #30·msayr opened Jul 16, 2026Owner·

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  2

• Add --max-overlap CLI flag and overlap guard to fuse_stacks_xy

  codex
  #29·msayr opened Jul 16, 2026Owner·

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• Add targeted slice retry for XY stack fusion

  codex
  #27·msayr opened Jul 15, 2026Owner·

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  4

• Add standalone XY stack downsampling utility

  codex
  #25·msayr opened Jul 9, 2026Owner·

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• Crop fully black borders after Z alignment

  codex
  #23·msayr opened Jul 8, 2026Owner·

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  3

• Add explicit Z slice skipping

  codex
  #18·msayr opened Jul 4, 2026Owner·

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  3

• Add Z alignment repair utility (fix_z_align.py)

  codex
  #16·msayr opened Jun 30, 2026Owner·

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  3

• Preserve global Z offsets and support config groups in get_ordered_datasets

  codex
  #15·msayr opened Jun 29, 2026Owner·

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  2

• Add SBEM stage-position XY alignment option

  codex
  #14·msayr opened Jun 29, 2026Owner·

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  2

• Improve XY fusion overlap detection by testing multiple z slices

  codex
  #11·msayr opened Jun 20, 2026Owner·

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  2

• Recompute fuse XY configs when overwriting

  codex
  #10·msayr opened Jun 14, 2026Owner·

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  2