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Harmonized main with MTB features#58

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njmmatthieu wants to merge 34 commits into
oncodash:mainfrom
njmmatthieu:vMTB-to-main
Open

Harmonized main with MTB features#58
njmmatthieu wants to merge 34 commits into
oncodash:mainfrom
njmmatthieu:vMTB-to-main

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@njmmatthieu
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Features

  • Mapping clinical data
  • Placeholders for:
    • Structural variants
    • Oncokb gene status

Usage

  1. uv run sh prepare.sh <DECIDER_data_dir> <DECIDER_data_version>
  2. uv run sh make.sh <DECIDER_data_dir> <DECIDER_data_version> [config] [debug]

TODO

  • Mapping Oncokb for alteration
  • Structural variants for the whole genome
  • Expression for copy number amplification

njmmatthieu and others added 30 commits May 17, 2026 16:56
… the previously used python model for clinical backend.
@njmmatthieu njmmatthieu requested review from clairelaudy and jdreo May 22, 2026 10:43
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2 participants