feat: align scverse backend adapters - #628
Draft
Intron7 wants to merge 13 commits into
Draft
Conversation
grst
reviewed
Apr 21, 2026
Comment on lines
+1
to
+30
| """Squidpy backend adapter for rapids_singlecell. | ||
|
|
||
| The dispatch decorator introspects the real RSC function signatures | ||
| (lazily imported on first access), so no need to duplicate them here. | ||
| """ | ||
|
|
||
| from __future__ import annotations | ||
|
|
||
| import importlib | ||
|
|
||
|
|
||
| class RscSquidpyBackend: | ||
| """Backend adapter exposing rapids_singlecell GPU implementations to squidpy.""" | ||
|
|
||
| name = "rapids_singlecell" | ||
| aliases = ["rapids-singlecell", "rsc", "cuda", "gpu"] | ||
|
|
||
| # squidpy function name -> module that implements it | ||
| _functions = { | ||
| "spatial_autocorr": "rapids_singlecell.squidpy_gpu", | ||
| "co_occurrence": "rapids_singlecell.squidpy_gpu", | ||
| "ligrec": "rapids_singlecell.squidpy_gpu", | ||
| } | ||
|
|
||
| def __getattr__(self, name: str): | ||
| if name in self._functions: | ||
| func = getattr(importlib.import_module(self._functions[name]), name) | ||
| setattr(self, name, func) # cache on instance | ||
| return func | ||
| raise AttributeError(f"{type(self).__name__!r} has no attribute {name!r}") |
There was a problem hiding this comment.
why the separate class? couldn't it just be a module that lazy re-exports the relevant functions?
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
rapids-singlecellentry point for bothscanpy.backendsandsquidpy.backends.cuda,rapids, andrapids_singlecell.get.aggregateimplementations.spatial_autocorr,co_occurrence,ligrec, andcalculate_niche.calculate_niche(data=..., inplace=...)API to RSC's GPUadata/copyconvention, and rejects unsupported semantics explicitly.Validation
ruff check --previewandruff format --checkpassed for the adapters and backend tests.inplace=Falsetocopy=True.