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add remote support
- #971
#971
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add remote support
#971
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Commits on Jan 24, 2025
add basic support and remote SpatialData tests
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removed 3.13 from test ci
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Merge branch 'no_python_313' into remote2
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fix
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uploading sdata to local s3 storage
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add _open_zarr_store
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revert changing write function signature
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update _open_zarr_store with StoreLike
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read image element from base store
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clean up remote mock tests, focus only on reading raster elements
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improve remote http test, add alternative
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add support for consolidated metadata store in util function, add _create_upath function
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allow for groups as store input
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handle consolidated metadata with upath
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split remote reading tests between http and http with consolidated metadata
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remove f_store_path, support remote raster types fully and keep local support for other elements
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Fix metadata_key bug now that store is not always FSStore. Add extra comments.
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add mypy fixes
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Fix linting errors
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fixed majority of tests
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spatialdata._io._utils: _open_zarr_store has to set dimension_separator to emulate previous ome_zarr.io.parse_url
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stay in sync with ome zarr format
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spatialdata._io.io_raster: support remote stores
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prevent crashing tests on 3.10
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Merge branch 'spatial-data-crash310' into remote2
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add basic support and remote SpatialData tests
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fix pre-commit
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Revert "Update pyproject.toml"
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fix
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uploading sdata to local s3 storage
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add _open_zarr_store
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revert changing write function signature
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update _open_zarr_store with StoreLike
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read image element from base store
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clean up remote mock tests, focus only on reading raster elements
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improve remote http test, add alternative
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add support for consolidated metadata store in util function, add _create_upath function
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allow for groups as store input
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handle consolidated metadata with upath
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split remote reading tests between http and http with consolidated metadata
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remove f_store_path, support remote raster types fully and keep local support for other elements
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Fix metadata_key bug now that store is not always FSStore. Add extra comments.
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add mypy fixes
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fixed majority of tests
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spatialdata._io._utils: _open_zarr_store has to set dimension_separator to emulate previous ome_zarr.io.parse_url
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stay in sync with ome zarr format
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prevent crashing tests on 3.10
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merge
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correct pyproject.toml
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remove type checking
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use sanitized _store
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Cloud fix remote embl datasets (#904)
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spatialdata.io.io_shapes: fix support for remote shapes (#902)
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spatialdata.io.io_points: fix support for remote points (#903)
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spatialdata._io: test remote tables support and fix repr (#905)
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small refactor
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add remote write support + cleanup (#973)
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