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Pull requests: scverse/squidpy

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Pull requests list

fix: ci's and scanpy 1.13 plot compat
#1253 opened Aug 5, 2026 by selmanozleyen Member Loading…
1
use rustworkx instead of networkx except the plotting
#1252 opened Aug 4, 2026 by selmanozleyen Member Loading…
1
chore: unify thread and process helpers
#1251 opened Aug 4, 2026 by selmanozleyen Member Loading…
1
fix: ensure radius values stored in AnnData.uns are writable
#1249 opened Aug 2, 2026 by selmanozleyen Member Loading…
1
1
Preserve Scanpy plotting compatibility across layouts
#1248 opened Aug 1, 2026 by stanbot8 Loading…
1
Initial framework of the niche refactor
#1245 opened Jul 21, 2026 by shashkat Loading…
1
2
Update template to v0.8.0
#1242 opened Jul 17, 2026 by scverse-bot Contributor Loading…
bugfix in _calculate_neighborhood_profile in gr/_niche.py
#1229 opened Jun 25, 2026 by shashkat Loading…
@selmanozleyen
1
[pre-commit.ci] pre-commit autoupdate
#1226 opened Jun 22, 2026 by pre-commit-ci Bot Loading…
1
refactor(datasets): use the shared scverse-misc dataset registry + downloader
#1213 opened Jun 15, 2026 by timtreis Member Loading…
10
Multi-slide pooled fit_stain_reference
#1209 opened Jun 14, 2026 by timtreis Member Loading…
@timtreis
5
feat: stalign with a fit apply pattern. release-added
#1195 opened Jun 1, 2026 by selmanozleyen Member Loading…
@selmanozleyen
12
Add spatialdata-plot delegation backend (gated by feature flag)
#1173 opened May 12, 2026 by timtreis Member • Draft
@timtreis
1
Draft: add contour-based ring density and smooth signed-distance density for SpatialData
#1163 opened Apr 16, 2026 by hutaobo • Draft
1
4
General purpose sq.tl.align() function with STAlign core logic
#1162 opened Apr 16, 2026 by timtreis Member Loading…
3
Feat/gene imputation
#1161 opened Apr 16, 2026 by MDLDan Contributor • Draft
2
Add pluggable backend dispatch system
#1151 opened Apr 7, 2026 by Intron7 Member • Draft
16
feat: remove ligrec parallelize
#1125 opened Feb 23, 2026 by selmanozleyen Member Loading…
@selmanozleyen
30
Improved sliding windows
#1116 opened Feb 10, 2026 by schrf Loading…
1
@selmanozleyen
12
Experimental Feature: Function delegation to rapids_singlecell when gpu is available
#1093 opened Jan 14, 2026 by selmanozleyen Member • Draft
@selmanozleyen
22
Add new spatial graph features and tests (closes #901)
#1091 opened Jan 3, 2026 by luckyy14 Loading…
1
Add Pytest Benchmarks Feature pytest-benchmark
#1070 opened Dec 1, 2025 by selmanozleyen Member • Draft
1
update var by dist normalization
#1065 opened Nov 20, 2025 by LLehner Member Loading…
5
Use the correct image for scatter plots with alternate spatial bases
#1032 opened Sep 8, 2025 by obriencshl Loading…
5
Add COZI to nhood_enrichment()
#1023 opened Aug 12, 2025 by chiarasch Loading…
1 task done
@selmanozleyen
7
ProTip! Updated in the last three days: updated:>2026-08-02.