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@stephenslab

Stephens lab

Research in statistical and computational methods for genetics at the University of Chicago.

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  1. susieR susieR Public

    R package for "sum of single effects" regression.

    R 266 59

  2. mashr mashr Public

    An R package for multivariate adaptive shrinkage.

    R 101 21

  3. flashr flashr Public

    R package for Empirical Bayes Factor Analysis.

    R 54 11

  4. fastTopics fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 86 12

  5. ebnm ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 14 12

  6. dsc dsc Public

    Repo for Dynamic Statistical Comparisons project

    HTML 13 12

Repositories

Showing 10 of 107 repositories
  • fsusieR Public

    R package for "Sum of Single Functions" (fSuSiE) with applications to fine-mapping of molecular profiles.

    stephenslab/fsusieR's past year of commit activity
    R 7 1 4 3 Updated Sep 3, 2026
  • mvsusieR Public

    A new model and algorithm for multivariate Bayesian variable selection regression.

    stephenslab/mvsusieR's past year of commit activity
    Jupyter Notebook 32 10 1 0 Updated Aug 31, 2026
  • finemap Public

    Demos of SuSiE and FINEMAP.

    stephenslab/finemap's past year of commit activity
    R 2 0 0 0 Updated Aug 31, 2026
  • susieR Public

    R package for "sum of single effects" regression.

    stephenslab/susieR's past year of commit activity
    R 266 59 48 3 Updated Aug 31, 2026
  • single-cell-jamboree Public

    Exploratory analyses of single-cell data sets using different matrix factorization approaches.

    stephenslab/single-cell-jamboree's past year of commit activity
    R 2 0 0 0 Updated Aug 25, 2026
  • fsusie-experiments Public

    Code and data for fsusie paper.

    stephenslab/fsusie-experiments's past year of commit activity
    R 1 MIT 1 0 0 Updated Aug 24, 2026
  • fashr Public

    R package for functional adaptive shrinkage (FASH).

    stephenslab/fashr's past year of commit activity
    R 3 0 1 0 Updated Aug 20, 2026
  • fastTopics-experiments Public

    Numerical experiments on fitting non-negative matrix factorizations and topic models.

    stephenslab/fastTopics-experiments's past year of commit activity
    R 2 MIT 1 0 0 Updated Jul 24, 2026
  • fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    stephenslab/fastTopics's past year of commit activity
    R 86 12 16 1 Updated May 22, 2026
  • flashier Public Forked from willwerscheid/flashier

    A faster and angrier package for EBMF.

    stephenslab/flashier's past year of commit activity
    R 0 13 0 0 Updated May 8, 2026
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