EHRMamba Embeddings model and task contribution DLH CS598 final project - #1037

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aravni2 wants to merge 25 commits into

sunlabuiuc:masterfrom

Commits on Apr 15, 2026

added ehrmamba embedding, mortality task, and modified ehrmamba model files
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99e360c

Commits on Apr 16, 2026

created successful tests
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acaa5b3
added both versions of labquantizer
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0e5a390

Commits on Apr 17, 2026

updated cache root
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2e4aed9
updated examples for full mimic4-demo pipeline,
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4b93008
added prediction probability outputs to example
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d3e5a07
cleaning dead code
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06c180a

Commits on Apr 19, 2026

Removed remaining version difference comments, added dataset to EmbeddingModel docstring
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363a501
remoeved utf-8 dashes
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added .rst files along with toctree indexing on models and tasks .rst files
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d94c7bf
updated test to include guard checks, and multiple embedding usage
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e09ae1e
re-ran example with full pipeline
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e328f4f
removed simple incomplete example
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d9c9336

Commits on Apr 20, 2026

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d1a261a

Commits on Apr 21, 2026

updated example to include mimic 3 "ablation"
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fd5d41a
added truncation to sequence length to avoid over indexing patient sequence, added to model as well
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86298f3
added anchor yeare for mimic 3 matching first year of data collection
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b757010
fixed anchor age to give more samples in train/eval/test
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3d0c6b0
added mimic-IV full data pipeline section
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3fe9d1a
created full model pipeline
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988b168