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- Sync tutorial_pyhealth_{data,trainer,medcode}.ipynb with the Colab
versions linked from docs/tutorials.rst. The repo copies of data and
trainer still used dataset.patients, which BaseDataset no longer has
(it is unique_patient_ids). The medcode notebook's ICD9CM->ICD10CM
cell relies on the icd-mappings backend added in the parent commits.
- docs/tutorials.rst: link each Colab tutorial to its source notebook,
turn every example filename into a link to the real file (fixing
wrong or renamed paths such as the EEG SparcNet and eICU scripts),
fix the broken readmission list-table, and blob/main -> blob/master.
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
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Re-lands #1256 on
master. #1256 was merged intomedcode/icd-mappingstwo minutes after that branch had already been squash-merged as #1257, so its changes never reachedmaster. This is the same commit cherry-picked ontomaster, with identical content and no conflicts.Changes
examples/tutorials/tutorial_pyhealth_medcode.ipynb: now matches the Colab version. ItsICD9CM → ICD10CMcell uses theicd-mappingsbackend from medcode: ICD-9 <-> ICD-10 translation and grouper vocabularies via icd-mappings #1257.tutorial_pyhealth_data.ipynb,tutorial_pyhealth_trainer.ipynb: synced with Colab, replacing the removeddataset.patientswithunique_patient_ids.docs/tutorials.rst:[Source]links to each tutorial notebook.blob/mainbecomesblob/master, and the file has no docutils warnings.Testing
!pip, withicd-mappings0.6.2; all pass. The data and trainer notebooks passed againstmasterin Sync tutorial notebooks with Colab and link example code in docs #1256, and nothing they depend on has changed since.🤖 Generated with Claude Code