Bump the rust group across 1 directory with 3 updates

[dependabot]

Updates the requirements on pyo3, numpy and num-derive to permit the latest version.
Updates pyo3 to 0.28.3

Release notes

Sourced from pyo3's releases.

PyO3 0.28.3

This patch contains several fixes for stability of the PyO3 0.28.x series:

• Python::attach and Python::try_attach will no longer return before the thread initializing the interpreter has finished runnning site.py when using the auto-initialize feature.
• Fix unsoundness in PyBytesWriter::write_vectored when targeting the Python 3.15 prerelease interpreter.
• Fix possible deadlock in .into_pyobject() implementation for C-like #[pyclass] enums.

A couple of edge cases causing compile failures were also fixed.

Thank you to the following contributors for the improvements:

@​alex @​bschoenmaeckers @​chirizxc @​davidhewitt @​Embers-of-the-Fire @​Icxolu @​maurosilber @​ngoldbaum

Changelog

Sourced from pyo3's changelog.

[0.28.3] - 2026-04-02

Fixed

• Fix compile error with #[pyclass(get_all)] on a type named Probe. #5837
• Fix compile error in debug builds related to _Py_NegativeRefcount with Python < 3.12. #5847
• Fix a race condition where Python::attach or try_attach could return before site.py had finished running. #5903
• Fix unsoundness in PyBytesWriter::write_vectored with Python 3.15 prerelease versions. #5907
• Fix deadlock in .into_pyobject() implementation for C-like #[pyclass] enums. #5928

[0.28.2] - 2026-02-18

Fixed

• Fix complex enum __qualname__ not using python name #5815
• Fix FFI definition PyType_GetTypeDataSize (was incorrectly named PyObject_GetTypeDataSize). #5819
• Fix memory corruption when subclassing native types with abi3 feature on Python 3.12+ (newly enabled in PyO3 0.28.0). #5823

[0.28.1] - 2026-02-14

Fixed

• Fix *args / **kwargs support in experimental-async feature (regressed in 0.28.0). #5771
• Fix clippy::declare_interior_mutable_const warning inside #[pyclass] generated code on enums. #5772
• Fix ambiguous_associated_items compilation error when deriving FromPyObject or using #[pyclass(from_py_object)] macro on enums with Error variant. #5784
• Fix __qualname__ for complex #[pyclass] enum variants to include the enum name. #5796
• Fix missing std::sync::atomic::Ordering import for targets without atomic64. #5808

[0.28.0] - 2026-02-01

Packaging

• Bump MSRV to Rust 1.83. #5531
• Bump minimum supported quote version to 1.0.37. #5531
• Bump supported GraalPy version to 25.0. #5542
• Drop memoffset dependency. #5545
• Support for free-threaded Python is now opt-out rather than opt-in. #5564
• Bump target-lexicon dependency to 0.13.3. #5571
• Drop indoc and unindent dependencies. #5608

Added

• Add __init__ support in #[pymethods]. #4951
• Expose PySuper on PyPy, GraalPy and ABI3 #4951
• Add PyString::from_fmt and py_format! macro. #5199
• Add #[pyclass(new = "from_fields")] option. #5421
• Add pyo3::buffer::PyUntypedBuffer, a type-erased form of PyBuffer<T>. #5458
• Add PyBytes::new_with_writer #5517
• Add PyClass::NAME. #5579
• Add pyo3_build_config::add_libpython_rpath_link_args. #5624

... (truncated)

Commits

• 743af64 release: 0.28.3
• 2042b4c fix deadlock when initializing enum via into_pyobject() (#5928)
• 0157247 ci: update UI tests for Rust 1.94 (#5859)
• e234f8a Update getting-started.md (#5899)
• c06848d fix ffi-check in 3.15.0a7 (#5873)
• 83f4283 remove unused try_trait_v2 feature when enabling the nightly feature (#5868)
• 0de57ed Fix unsoundness in PyBytesWriter::write_vectored (#5907)
• 49cd13f fixes #5900 -- address race condition with initialization and site.py loading...
• c90d163 [fix] Fix std::ffi import for _Py_NegativeRefcount (#5847)
• b79d725 fix(pyo3-macros): allow pyclass named Probe (#5837)
• Additional commits viewable in compare view

Updates numpy to 0.29.0

Release notes

Sourced from numpy's releases.

v0.29.0

What's Changed

• Fix PyArray_DTypeMeta definition when Py_LIMITED_API is disabled by @​mattiapenati in PyO3/rust-numpy#532
• Fix broken documentation links by @​mattiapenati in PyO3/rust-numpy#536
• Bump tar from 0.4.41 to 0.4.45 in /examples/linalg by @​dependabot[bot] in PyO3/rust-numpy#539
• Update to target ABI v2 by @​mattiapenati in PyO3/rust-numpy#537
• Replace std::os::raw with std::ffi by @​mattiapenati in PyO3/rust-numpy#540
• Use NumPy C api to perform conversion to ArrayLike by @​mattiapenati in PyO3/rust-numpy#542
• Fix typos by @​mattiapenati in PyO3/rust-numpy#543
• Update ndarray version constraints in README.md by @​purepani in PyO3/rust-numpy#544
• fix: implement is_exact_type_of to check dtype and shape for PyArray by @​asjad2401 in PyO3/rust-numpy#550
• Updated to PyO3 version 0.29.0 by @​g-bauer in PyO3/rust-numpy#553

New Contributors

• @​purepani made their first contribution in PyO3/rust-numpy#544
• @​asjad2401 made their first contribution in PyO3/rust-numpy#550

Full Changelog: PyO3/rust-numpy@v0.28.0...v0.29.0

Changelog

Sourced from numpy's changelog.

Changelog

• Unreleased

  • PyReadonlyArray/PyReadwriteArray extraction now returns a PyErr which reports the actual dtype/dimensionality mismatch instead of nonsensical CastError messages like “'ndarray' is not an instance of 'ndarray'” (#562)

• v0.29.0

  • Fix PyArray_DTypeMeta definition when Py_LIMITED_API is disabled (#532)
  • The NumPy C API binding has been updated to target the ABI v2, while maintaining runtime compatibility with NumPy v1 targeting the API v1.15. The higher interface is unchanged. (#537)
  • Fix is_exact_type_of / cast_exact to use PyArray_CheckExact instead of PyArray_Check, correctly rejecting subclasses of ndarray. (#550)
  • Bump PyO3 dependency to v0.29.0 (#553)
    • Fix PyCapsule::new_with_destructor to use PyCapsule::new_with_value_and_destructor.
    • Open nalgebra range to include 0.35.

• v0.28.0

  • Fix mismatched behavior between PyArrayLike1 and PyArrayLike2 when used with floats (#520)
  • Add ownership-moving conversions into PyReadonlyArray and PyReadwriteArray (#524)
  • Fix UB when calling PyArray::as_slice and as_slice_mut on misaligned arrays (#525)
  • Bump PyO3 dependency to v0.28.0. (#530)

• v0.27.1

  • Bump ndarray dependency to v0.17. (#516)

• v0.27.0

  • Bump PyO3 dependency to v0.27.0. (#515)

• v0.26.0

  • bump MSRV to 1.74, matching PyO3 (#504)
  • extend supported nalgebra version to 0.34 (#503)
  • Bump PyO3 dependency to v0.26.0. (#506)

• v0.25.0,

  • Bump PyO3 dependency to v0.25.0. (#492)

• v0.24.0

  • Bump PyO3 dependency to v0.24.0. (#483)
  • Support Python 3.13t "free-threaded" Python. (#471)

• v0.23.0

  • Drop support for PyPy 3.7 and 3.8. (#470)
  • Require Element: Sync as part of the free-threading support in PyO3 0.23 (#469)
  • Bump PyO3 dependency to v0.23.0 ([#457])
    • removed the gil-refs feature
    • reintroduced function names without _bound suffix + deprecating the old names
    • switched to IntoPyObject as trait bound
  • Bump rustc-hash dependency to 2.0. ([#472])

• v0.22.1

  • Fix building on 32-bit Windows. (#463)
  • Add PyReadwriteArray::make_nonwriteable. (#462)
  • Implement From<PyReadWriteArray> for PyReadonlyArray. (#462)

... (truncated)

Commits

• 4ef0102 Updated to PyO3 version 0.29.0 (#553)
• edec058 fix: implement is_exact_type_of to check dtype and shape for PyArray (#550)
• 8e6f59d Update ndarray version constraints in README.md (#544)
• 3b4b1b0 Fix typos (#543)
• 3c382b3 Use NumPy C API to implement object to array conversion
• 9123c34 Add benchmark for array like
• 061abd9 Port benchmark to criterion
• 099b0ed Replace std::os::raw with std::ffi (#540)
• dbc841e Update to target ABI v2 (#537)
• 47b3da8 Bump tar from 0.4.41 to 0.4.45 in /examples/linalg (#539)
• Additional commits viewable in compare view

Updates num-derive to 0.5.1

Changelog

Sourced from num-derive's changelog.

Release 0.5.1 (2026-07-20)

• Remove mention of the old "full-syntax" feature.

Release 0.5.0 (2026-07-20)

• Upgrade to syn v3.
  • This raises the minimum supported rustc to 1.71.

Release 0.4.2 (2024-02-06)

• Use anon-const to avoid RFC 3373 warnings.

Release 0.4.1 (2023-10-07)

• Make Float work with no_std -- thanks @​vkahl!
• Emit full paths for Option and Result.
• Add derive macro for num_traits::Signed and Unsigned -- thanks @​tdelabro!

Release 0.4.0 (2023-06-29)

• Update to syn-2 -- thanks @​maurer!
  • This raises the minimum supported rustc to 1.56.
  • The "full-syntax" feature has also been removed.

Release 0.3.3 (2020-10-29)

• Make NumOps work with no_std -- thanks @​jedrzejboczar!

Release 0.3.2 (2020-08-24)

• Add #[inline] to all derived functions -- thanks @​Amanieu!

Release 0.3.1 (2020-07-28)

• [Add num_traits proc_macro helper for explicit import][35] - thanks @​jean-airoldie!

... (truncated)

Commits

• 2f73ee8 Merge pull request #72 from cuviper/readme
• 456e75d Release 0.5.1
• 1e5e78f Remove full-syntax from the readme
• 3230c9c Merge pull request #71 from cuviper/syn3
• cab6df7 Remove the stale html_root_url
• 9553029 Release 0.5.0
• 250c132 Stop caching the registry
• 8087623 Raise the MSRV to 1.71 (like syn)
• 14a12df Upgrade to syn v3
• 96ca025 Merge pull request #70 from cuviper/rename-head
• Additional commits viewable in compare view

[Cadair]

@dependabot rebase