Multivariate Imputation by Chained Equations
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Fast and accurate cross-correlation over arbitrary time lags.
Fast and accurate cross-correlation over arbitrary time lags. Moved to:
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Javascript / node.js code to read FCS flow cytometry data
🧫 Read Flow Cytometry Standard (FCS) files in Julia
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Interactive flow and mass cytometry gating in R/Shiny on SingleCellExperiment objects, with Gating-ML round-trip. Browser version (no R): github.com/david-priest/GateLab
Console Media Player with basic commands
Tool for validating FCS file specification compliance
Low-level Flow Cytometry Standard (FCS) file serializer/deserializer
Free, open-source flow cytometry analysis workbench for conventional, spectral and mass cytometry. Gating, compensation, spectral unmixing, QC, clustering/UMAP, statistics and publication figures. Runs locally, your data never leaves your machine. Includes MCP server for AI agents, and Python and R API clients.
Django-based Repository for Flow Cytometry Data
Browser-based flow and mass cytometry gating app: FCS in and out, cell images from the BD FACSDiscover S8 imaging sorter, one population tree per workspace tailored per file or group, FlowJo workspace and FACSChorus import and export, Gating-ML 2.0, compensation, statistics and publication figures. Everything runs locally.
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
A collection of visualization examples for Flow Cytometry Data
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