Suite of tools for use in genome assembly and consensus. Work in progress.
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Mar 22, 2021 - Go
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genome-mapping
Here are 8 public repositories matching this topic...
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
bioinformatics pipeline genomics bioinformatics-pipeline fasta smalt structurevariation genomes-comparison genome-mapping genome-alignment pav-sequences
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Mar 5, 2018 - C
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
python genome proteins protein data-analysis fasta orfs genome-analysis orf genome-mapping sars covid-19 covid covid19 sars-cov-2 covid19-data protein-encoding proteinblast
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Mar 25, 2022 - Jupyter Notebook
Implement and compare 2 pattern matching algorithms for genome mapping, one using suffix array and the other using Burrows-Wheeler Transform
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Dec 22, 2020 - Python
This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.
bioinformatics gcp computational-biology population-genomics variant-calling high-throughput-sequencing genome-analysis genome-assembly illumina-sequencing read-mapping pangenomics genome-mapping pangenome-graph
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Jun 6, 2025 - HTML
Docker to run BWA for aligning sequences against a reference genome
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Mar 6, 2018
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
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Jun 30, 2023
Python tool for assessing genomic coordinate liftOver results using exact alignment geometry, UCSC comparative evidence, reverse liftOver and flanking-context checks, and provenance-aware interpretation.
python bioinformatics genomics reproducible-research liftover comparative-genomics ucsc coordinate-conversion genome-assembly sequence-alignment ucsc-browser scientific-software coordinate-conversions genome-mapping genomic-coordinates ucsc-genome-browser chain-files
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Sep 7, 2026 - Python
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