A pipeline for predicting and masking transposable elements in multiple genomes.

Allele-specific analysis of RNA-seq and DNA-seq data

RNAchallenge dataset for the classification of protein-coding and non-coding RNAs

Identification of novel lncRNAs in non-small cell lung cancer. RNA-sequencing course (467713), University of Bern

LLM Agent–Driven ncRNA Design via Intrinsic Features and Structure-Guided Feedback

(1) portfolio paper https://dl.acm.org/doi/abs/10.1145/3487553.3524634 (2) ncRNA paper https://ieeexplore.ieee.org/document/9746494 (3) Collaborative learning applied to other datasets https://ieeexplore.ieee.org/document/9746494

Predicting Long Non-Coding & Circular RNAs in Parkinsons Disease using single nucleus RNA-seq dataset from NCBI GEO (GSE184950)

Code for exploration of non-coding elements in single-cell RNA seq data

Research code and datasets for GBDTSVM, a GBDT-SVM framework for predicting snoRNA-disease associations using integrated biological similarity profiles.

Supplementary materials for PSB submission