primers

A PCR primer tool for DNA assembly flows

Repository for pan-spefic primers designed for tiled full genome sequencing or qPCR of viral pathogens. Pathogens include amongst others Hepatitis E virus, Hepatitis A virus, Poliovirus and SARS-COV-2. Primers were designed with varVAMP.

Scripts for paper Vaulot et al. 2022

Targeted characterisation of short structural variation.

Design clade-specific primers targeting a pan-genome core gene

R package for designing miRNA primers.

PriDe: Primer Design tool

A tool to create sequences for primers targeting exon-exon splice junctions

A tool combining python, local blast, and the Ensembl REST API to design primers to genomic locations or genes.

A Pi Pico with IR breakbeam sensors monitors the seating of primers and keeps count.

A brief primer on Docker

PCR Master mix calculator

Analysis and selection of primers for the study of transposable elements.

<pilot> in-silico amplicons optimised for phylogenetic signal

Quickly identify and generate primers for diagnostic loci

A program that allows you to visualize your gRNA sequence as well as homology arm primers in the context of the gene itself.

Traducción al español del Capítulo 1 de Rstudio Primers

Python tool for designing tiled amplicon primers for NGS of small genomes.

Set of tools to deal with sequences in FastQ format

DevOps reference — Ansible, Bash, Docker, Git, K8s, Terraform, Prometheus, Grafana notes, snippets, configs.