Genome assembly quality assessment using QUAST
-
Updated
Jun 18, 2026 - HTML
#
quast
Here are 13 public repositories matching this topic...
🦇🧫📊Study on bat gut shotgun metagenomics
phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2
-
Updated
May 21, 2026 - Jupyter Notebook
reproducible Snakemake pipeline for bacterial hybrid assembly.
python snakemake nanopore illumina genome-assembly masurca snakemake-workflow hybrid-assembly quast polca snakemake-pipeline flye bacterial-genomics filtlong
-
Updated
Jun 30, 2026 - Python
QUAST assembly assessment using a reference genome.
bioinformatics genome-assembly reference-genome wsl-ubuntu bacterial-genomes quast lactiplantibacillus-plantarum assembly-assessment
-
Updated
Jun 21, 2026 - HTML
Run multiple metagenome filtering programs using Docker containers
-
Updated
Nov 3, 2025 - Shell
Automated Bash pipeline for hybrid de novo bacterial genome assembly, combining Oxford Nanopore (ONT) and Illumina reads with QC, polishing (POLCA), and evaluation (QUAST).
bash bioinformatics pipeline illumina genome-assembly masurca nanopore-sequencing hybrid-assembly quast flye bacterial-genomics bash-pipeline filtlong
-
Updated
Jun 30, 2026 - Shell
Reusable comparative bacterial genomics pipeline for assembled bacterial genome FASTA files using QUAST, Bakta, FastANI, Panaroo, and FastTree.
bioinformatics comparative-genomics phylogeny quast fastani panaroo bacterial-genomics bakta genomics-pipeline
-
Updated
May 27, 2026 - Python
A modular, reproducible, and automated Bash pipeline for bacterial isolate whole-genome sequencing analysis from Illumina paired-end reads, including quality control, taxonomic classification, genome assembly, genome characterization, and coverage estimation.
linux bash bioinformatics genomics amr microbiology mlst wgs spades samtools whole-genome-sequencing bowtie2 antimicrobial-resistance quast kraken2 bracken abricate checkm bacterial-genomics amrfinderplus
-
Updated
Jul 21, 2026 - Shell
The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.
spades fastp quast nextflow-pipeline dynamic-command-construction-for-preprocessing scalability-across-computational-environments a-detailed-demonstration-of-naming-consistency trimming-combinations
-
Updated
Jun 15, 2024 - HTML
Reusable bacterial genome analysis pipeline for paired-end FASTQ data using FastQC, fastp, SPAdes, QUAST, Prokka, and MultiQC.
bioinformatics quality-control genome-annotation multiqc spades genome-assembly fastqc fastp prokka quast bacterial-genomics genomics-pipeline
-
Updated
May 27, 2026 - Shell
Improve this page
Add a description, image, and links to the quast topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the quast topic, visit your repo's landing page and select "manage topics."