seqkit
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Reproducible Bash pipeline for miRNA precursor analysis using miRBase v22 and SeqKit. Filters by organism and gene target, converts RNA→DNA, and exports GC content and length metrics as TSV and Markdown reports. Configurable via CLI args.
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Apr 9, 2026 - Shell
This repository offers two pipelines to process NGS data by identifying and counting functional regions based on profile HMMs and matching query sequences to these regions based on similarity. This work was carried out as part of my master's thesis at Lund University, completed at Bionamic AB.
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May 26, 2025 - JavaScript
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