This pipeline implements competitive fragment recruitment to map metagenomic sequence space against a representative reference genome. In microbial ecology, read recruitment provides a quantitative window into the evolutionary dynamics of natural populations by measuring nucleotide-level polymorphism and consensus sequence divergence.
metagenomics population-genetics microbial-ecology anvio microdiversity single-nucleotide-variants strain-resolved-profiling omputational-biology
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Updated
Jul 2, 2026 - Shell