within-host

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Here are 4 public repositories matching this topic...

chasewnelson / SARS-CoV-2-ORF3d

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Supplementary scripts for Nelson et al. (2020) paper on ORF3d

python r perl biopython overlapping-genes within-host covid-19 sars-cov-2 orf3d olgenie snpgenie between-host

Updated Nov 5, 2020
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arnaud00013 / SARS-CoV-2-HPDA-evolutionary-analysis

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This repository contains a script for analyzing SARS-CoV-2 evolution in epitopes during the first two waves of the COVID-19 pandemic. The immunological data come from a high protein density array analysis of SARS-CoV-2 epitopes in 15 patients (N'Guessan A. et al., 2022). This script and the related data can be updated manually to integrate data …

evolution transmission delta selection immunology omicron within-host sars-cov-2 immune-escape variants-of-interest variants-of-concern

Updated Feb 15, 2022
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SineadMorris / Measles

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Within-host modeling of acute measles infection

modeling within-host measles

Updated Dec 4, 2018

GaiaGro / stochastic-viral-dynamics

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Exact stochastic simulation of a two-strain within-host viral model with an effector response, against its deterministic limit and branching-process theory

python numba mathematical-biology drug-resistance gillespie-algorithm stochastic-simulation within-host branching-process viral-dynamics

Updated Oct 28, 2026
Python

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