Introduce ID autocomplete and gene density endpoints to replace legacy CGI scripts#315
Open
rmobmina wants to merge 55 commits intoBioAnalyticResource:devfrom
Open
Introduce ID autocomplete and gene density endpoints to replace legacy CGI scripts#315rmobmina wants to merge 55 commits intoBioAnalyticResource:devfrom
rmobmina wants to merge 55 commits intoBioAnalyticResource:devfrom
Conversation
Contributor
rmobmina
commented
May 1, 2026
rmobmina
commented
- Adds GET /gene_information/id_autocomplete: Returns up to 15 gene suggestions for a given search term, querying AGI IDs, gene aliases, gene names, and raw GFF3 IDs in priority order. This endpoint replaces the legacy CGI-based autocomplete script.
- Adds GET /gene_density: Returns per-bin gene count arrays across all seven Arabidopsis thaliana chromosomes for a specified bin size. This replaces the legacy CGI script used by ePlant’s ChromosomeView.
Update Master branch
Update master branch before updating everything else.
Update master branch
Update master branch
Sync master branch
Update master branch
Update Master Branch
Sync branches ...
Update Requirements
Update master branch
Update main branch
Redis is now working
Update main branch
Update Main branch
Update main branch
Update from dev branch
Update main ...
Update main branch
ThaleMine Updated
Update requirements.txt
Update main branch
Added eFP Grape
Updated main branch
- fix agi_to_probset typo (was agi_to_probst) in gene_id_utils.py - add data_type field to microarray /samples endpoint response - switch endpoint to efp_species_view_info_typed.json - add typed eFP view info JSON and data type annotation script - ignore large SQL dump files from git tracking
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.