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Introduce ID autocomplete and gene density endpoints to replace legacy CGI scripts #315

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Introduce ID autocomplete and gene density endpoints to replace legacy CGI scripts #315

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7fccc10
Merge pull request #91 from BioAnalyticResource/dev
asherpasha Oct 14, 2021
5b9265e
Merge pull request #93 from BioAnalyticResource/dev
asherpasha Nov 5, 2021
7bcdbdf
Merge pull request #97 from BioAnalyticResource/dev
asherpasha Nov 25, 2021
a05f196
Merge pull request #101 from BioAnalyticResource/dev
asherpasha Nov 25, 2021
29e97ab
Merge pull request #119 from BioAnalyticResource/dev
asherpasha Jan 14, 2022
b1fa5fe
Merge pull request #123 from BioAnalyticResource/dev
asherpasha Jan 24, 2022
21b07f5
Merge pull request #132 from BioAnalyticResource/dev
asherpasha Apr 1, 2022
cf5fe5d
Merge pull request #140 from BioAnalyticResource/dev
asherpasha Jun 7, 2022
a184ca5
Merge pull request #145 from BioAnalyticResource/dev
asherpasha Aug 22, 2022
87259b8
Merge pull request #150 from BioAnalyticResource/dev
asherpasha Oct 6, 2022
952e648
Merge pull request #154 from BioAnalyticResource/dev
asherpasha Dec 22, 2022
5c98688
Merge pull request #156 from BioAnalyticResource/dev
asherpasha Jan 1, 2023
b0f3a50
Merge pull request #161 from BioAnalyticResource/dev
asherpasha Feb 17, 2023
5cd3240
Merge pull request #169 from BioAnalyticResource/dev
asherpasha Apr 6, 2023
43fbe2a
Merge pull request #179 from BioAnalyticResource/dev
asherpasha Jul 8, 2023
8b2fdc5
Merge pull request #185 from BioAnalyticResource/dev
asherpasha Jul 26, 2023
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Merge pull request #187 from BioAnalyticResource/dev
asherpasha Jul 31, 2023
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Merge pull request #197 from BioAnalyticResource/dev
asherpasha Oct 23, 2023
6cd621b
Merge pull request #202 from BioAnalyticResource/dev
asherpasha Nov 2, 2023
9e7d9b0
Merge pull request #204 from BioAnalyticResource/dev
asherpasha Jan 19, 2024
24a2290
Merge pull request #206 from BioAnalyticResource/dev
asherpasha Mar 4, 2024
20c1679
Merge pull request #208 from BioAnalyticResource/dev
asherpasha Mar 18, 2024
a995369
Merge pull request #215 from BioAnalyticResource/dev
asherpasha Apr 26, 2024
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Merge pull request #227 from BioAnalyticResource/dev
asherpasha Jul 8, 2024
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Merge pull request #231 from BioAnalyticResource/dev
asherpasha Jul 30, 2024
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Merge pull request #237 from BioAnalyticResource/dev
asherpasha Aug 21, 2024
a195141
Merge pull request #241 from BioAnalyticResource/dev
asherpasha Sep 27, 2024
9d6a957
Merge pull request #243 from BioAnalyticResource/dev
asherpasha Oct 2, 2024
2885de8
Merge pull request #246 from BioAnalyticResource/dev
asherpasha Dec 1, 2024
9c33aa2
Merge pull request #248 from BioAnalyticResource/dev
asherpasha Dec 4, 2024
a4da029
Merge pull request #250 from BioAnalyticResource/dev
asherpasha Dec 23, 2024
36c52f6
Merge pull request #253 from BioAnalyticResource/dev
asherpasha Jan 21, 2025
0168dae
Merge pull request #256 from BioAnalyticResource/dev
asherpasha Feb 8, 2025
9c31979
Merge pull request #258 from BioAnalyticResource/dev
asherpasha Feb 8, 2025
79ef834
Merge pull request #264 from BioAnalyticResource/dev
asherpasha Apr 19, 2025
2f612af
Merge pull request #274 from BioAnalyticResource/dev
asherpasha Jul 25, 2025
30c03f2
Merge pull request #277 from BioAnalyticResource/dev
asherpasha Aug 7, 2025
e719beb
Merge pull request #279 from BioAnalyticResource/dev
asherpasha Sep 25, 2025
78071ca
Merge pull request #281 from BioAnalyticResource/dev
asherpasha Sep 29, 2025
5aac55a
Merge pull request #283 from BioAnalyticResource/dev
asherpasha Oct 29, 2025
f039563
Merge pull request #298 from BioAnalyticResource/dev
asherpasha Jan 22, 2026
a320300
Merge pull request #311 from BioAnalyticResource/dev
asherpasha Apr 3, 2026
2f87b46
resolve merge conflicts and add remaining EFP pipeline files
rmobmina Apr 7, 2026
a51755c
standardise docstrings and add attribution headers across all EFP files
rmobmina Apr 7, 2026
086115c
fix flake8 E226 whitespace around arithmetic operator
rmobmina Apr 7, 2026
013d2c9
lots of docs added and enhanced comments and notes
rmobmina Apr 13, 2026
708bcf5
cleaned entire repo one last time and ran flake8
rmobmina Apr 13, 2026
4549a93
tests should now all pass
rmobmina Apr 13, 2026
e94514d
tests should pass now
rmobmina Apr 13, 2026
ae0ad34
converted gene_query endpoint from POST to GET
rmobmina Apr 16, 2026
da3530f
added auto complete endpoint
rmobmina Apr 22, 2026
5a6430c
Added autocomplete and genedensity endpoints + tests
rmobmina Apr 30, 2026
4afa6b7
add namespaces to init
rmobmina Apr 30, 2026
999bdbf
Merge remote-tracking branch 'upstream/master'
rmobmina Apr 30, 2026
d4393cf
cleaned repo by removing archive folder notes and scripts
rmobmina May 1, 2026
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3 changes: 3 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -144,3 +144,6 @@ output/*

# Local sqlite mirrors generated from MySQL dumps
config/databases/*.db

# Archive test data — large DB dumps, exports, and CSVs; not for version control
archive/test_data/
287 changes: 0 additions & 287 deletions api/Archive/analyze_efp_schemas.py
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