Detection#16
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NetZissou
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Jul 21, 2025
NetZissou
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- Base YOLO Detector
- Camera-trap animal detection (closes Animal Detection #7 )
- Face detection (closes Face Detection #6 )
…the original image
Face Detection
Merge Animal Detection
NetZissou
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documentation
…ated authors list; updated project URL sections
egrace479
reviewed
Oct 1, 2025
- added HDF5ImageDataset class to schedule, I/O, and process during batch inference - updated package dependency to include `h5py` pkg
- added scripts to convert webdataset into HDF5 file storage - added `webdataset` as the optional dependency
- added hdf5 as the new supported input - modified the file list param processing to make it also work for hdf5 files
added config & SLURM job template for face & animal detection modules
Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>
This was referenced Nov 19, 2025
Merged
- integrated HDF5 as image data source input option for batch embedding scripts - added SLURM job scripts + configs template for batch embed HDF5 tasks - modified documentation index page to reflect the HDF5 integration update
… refs - Add HDF5ImageDataset to top-level package exports for consistent API - Add conversion feature check to print_installation_guide() - Remove references to nonexistent HDF5Writer class in config and SLURM templates - Replace emoji symbols with plain text in installation guide output Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
The conversion tool is a one-time data prep task, not an inference concern. Removing it keeps the package focused on its core mission of GPU saturation during inference. HDF5ImageDataset (the inference input format) is unaffected. Removed: - src/hpc_inference/utils/wds_to_hdf5.py - scripts/conversion/wds_to_hdf5.slurm - [conversion] optional dependency group (webdataset) - Conversion feature check from print_installation_guide() - Conversion references from config/SLURM templates Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Replace pynvml with nvidia-ml-py in pyproject.toml (aligns with PR #27) - Fix [yolo] -> [detection] optional extra in base_detector.py and all detection SLURM templates (5 files) Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Move image validation before color conversion in HDF5ImageDataset so corrupted data is caught early (thompsonmj) - Comment out optional --file_list in HDF5 and Parquet SLURM templates to prevent placeholder path errors (thompsonmj) - Update --file_list help string to include HDF5 file types (thompsonmj) - Make templates a linkable header in docs/index.md (egrace479) Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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