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- io abstractions: Output enum, ReadView etc - Fix --ordered, --check-pairs, flags passthrough, compression level validation - customisable default 16 MiB blocks or input block size if cbq, w/e larger - Comments and misc trivial CLI churn for CBQ etc
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Will update for binseq 0.9.6 which maps non ACGTacgt to N by default automatically. Thanks @noamteyssier! |
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@nrminor @alejandrogzi Would you care to test this PR branch adding cbq IO? |
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Thanks @noamteyssier for changing the behaviour of the latest binseq/bqtools to canonicalise non- |
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CBQ filtering speed matches fasta up to 16 threads, with CBQ being a fifth of the size on disk. |
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Thanks for your PR @alejandrogzi! |
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