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Stop parsing interpro.xml once have release info #85

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Merged
nextgenusfs merged 1 commit into from
Aug 3, 2026
Merged

Stop parsing interpro.xml once have release info #85

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5 changes: 5 additions & 0 deletions funannotate2/install.py
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Original file line number Diff line number Diff line change
Expand Up @@ -718,13 +718,18 @@ def interproDB(wget=False):
num_records = ""
version = ""
iprdate = ""
xml_done = False
for event, elem in cElementTree.iterparse(iprXML):
if elem.tag == "release":
for x in list(elem):
if x.attrib["dbname"] == "INTERPRO":
num_records = int(x.attrib["entry_count"])
version = x.attrib["version"]
iprdate = x.attrib["file_date"]
xml_done = True
break
if xml_done:
break
try:
iprdate = datetime.datetime.strptime(iprdate, "%d-%b-%y").strftime("%Y-%m-%d")
except ValueError:
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